2025-12-01
This commit is contained in:
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"""
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Small utilities for testing.
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"""
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import os
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import gc
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import sys
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from joblib._multiprocessing_helpers import mp
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from joblib.testing import SkipTest, skipif
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try:
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import lz4
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except ImportError:
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lz4 = None
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IS_PYPY = hasattr(sys, "pypy_version_info")
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# A decorator to run tests only when numpy is available
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try:
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import numpy as np
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def with_numpy(func):
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"""A decorator to skip tests requiring numpy."""
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return func
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except ImportError:
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def with_numpy(func):
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"""A decorator to skip tests requiring numpy."""
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def my_func():
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raise SkipTest('Test requires numpy')
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return my_func
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np = None
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# TODO: Turn this back on after refactoring yield based tests in test_hashing
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# with_numpy = skipif(not np, reason='Test requires numpy.')
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# we use memory_profiler library for memory consumption checks
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try:
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from memory_profiler import memory_usage
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def with_memory_profiler(func):
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"""A decorator to skip tests requiring memory_profiler."""
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return func
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def memory_used(func, *args, **kwargs):
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"""Compute memory usage when executing func."""
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gc.collect()
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mem_use = memory_usage((func, args, kwargs), interval=.001)
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return max(mem_use) - min(mem_use)
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except ImportError:
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def with_memory_profiler(func):
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"""A decorator to skip tests requiring memory_profiler."""
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def dummy_func():
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raise SkipTest('Test requires memory_profiler.')
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return dummy_func
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memory_usage = memory_used = None
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def force_gc_pypy():
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# The gc in pypy can be delayed. Force it to test the behavior when it
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# will eventually be collected.
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if IS_PYPY:
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# Run gc.collect() twice to make sure the weakref is collected, as
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# mentionned in the pypy doc:
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# https://doc.pypy.org/en/latest/config/objspace.usemodules._weakref.html
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import gc
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gc.collect()
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gc.collect()
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with_multiprocessing = skipif(
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mp is None, reason='Needs multiprocessing to run.')
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with_dev_shm = skipif(
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not os.path.exists('/dev/shm'),
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reason='This test requires a large /dev/shm shared memory fs.')
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with_lz4 = skipif(lz4 is None, reason='Needs lz4 compression to run')
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without_lz4 = skipif(
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lz4 is not None, reason='Needs lz4 not being installed to run')
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+95
@@ -0,0 +1,95 @@
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"""
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This script is used to generate test data for joblib/test/test_numpy_pickle.py
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"""
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import sys
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import re
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# pytest needs to be able to import this module even when numpy is
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# not installed
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try:
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import numpy as np
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except ImportError:
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np = None
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import joblib
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def get_joblib_version(joblib_version=joblib.__version__):
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"""Normalize joblib version by removing suffix.
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>>> get_joblib_version('0.8.4')
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'0.8.4'
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>>> get_joblib_version('0.8.4b1')
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'0.8.4'
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>>> get_joblib_version('0.9.dev0')
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'0.9'
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"""
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matches = [re.match(r'(\d+).*', each)
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for each in joblib_version.split('.')]
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return '.'.join([m.group(1) for m in matches if m is not None])
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def write_test_pickle(to_pickle, args):
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kwargs = {}
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compress = args.compress
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method = args.method
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joblib_version = get_joblib_version()
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py_version = '{0[0]}{0[1]}'.format(sys.version_info)
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numpy_version = ''.join(np.__version__.split('.')[:2])
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# The game here is to generate the right filename according to the options.
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body = '_compressed' if (compress and method == 'zlib') else ''
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if compress:
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if method == 'zlib':
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kwargs['compress'] = True
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extension = '.gz'
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else:
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kwargs['compress'] = (method, 3)
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extension = '.pkl.{}'.format(method)
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if args.cache_size:
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kwargs['cache_size'] = 0
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body += '_cache_size'
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else:
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extension = '.pkl'
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pickle_filename = 'joblib_{}{}_pickle_py{}_np{}{}'.format(
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joblib_version, body, py_version, numpy_version, extension)
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try:
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joblib.dump(to_pickle, pickle_filename, **kwargs)
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except Exception as e:
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# With old python version (=< 3.3.), we can arrive there when
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# dumping compressed pickle with LzmaFile.
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print("Error: cannot generate file '{}' with arguments '{}'. "
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"Error was: {}".format(pickle_filename, kwargs, e))
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else:
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print("File '{}' generated successfully.".format(pickle_filename))
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if __name__ == '__main__':
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import argparse
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parser = argparse.ArgumentParser(description="Joblib pickle data "
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"generator.")
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parser.add_argument('--cache_size', action="store_true",
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help="Force creation of companion numpy "
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"files for pickled arrays.")
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parser.add_argument('--compress', action="store_true",
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help="Generate compress pickles.")
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parser.add_argument('--method', type=str, default='zlib',
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choices=['zlib', 'gzip', 'bz2', 'xz', 'lzma', 'lz4'],
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help="Set compression method.")
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# We need to be specific about dtypes in particular endianness
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# because the pickles can be generated on one architecture and
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# the tests run on another one. See
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# https://github.com/joblib/joblib/issues/279.
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to_pickle = [np.arange(5, dtype=np.dtype('<i8')),
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np.arange(5, dtype=np.dtype('<f8')),
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np.array([1, 'abc', {'a': 1, 'b': 2}], dtype='O'),
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# all possible bytes as a byte string
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np.arange(256, dtype=np.uint8).tobytes(),
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np.matrix([0, 1, 2], dtype=np.dtype('<i8')),
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# unicode string with non-ascii chars
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u"C'est l'\xe9t\xe9 !"]
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write_test_pickle(to_pickle, parser.parse_args())
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@@ -0,0 +1,35 @@
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import mmap
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from joblib.backports import make_memmap, concurrency_safe_rename
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from joblib.test.common import with_numpy
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from joblib.testing import parametrize
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from joblib import Parallel, delayed
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@with_numpy
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def test_memmap(tmpdir):
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fname = tmpdir.join('test.mmap').strpath
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size = 5 * mmap.ALLOCATIONGRANULARITY
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offset = mmap.ALLOCATIONGRANULARITY + 1
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memmap_obj = make_memmap(fname, shape=size, mode='w+', offset=offset)
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assert memmap_obj.offset == offset
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@parametrize('dst_content', [None, 'dst content'])
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@parametrize('backend', [None, 'threading'])
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def test_concurrency_safe_rename(tmpdir, dst_content, backend):
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src_paths = [tmpdir.join('src_%d' % i) for i in range(4)]
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for src_path in src_paths:
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src_path.write('src content')
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dst_path = tmpdir.join('dst')
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if dst_content is not None:
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dst_path.write(dst_content)
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Parallel(n_jobs=4, backend=backend)(
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delayed(concurrency_safe_rename)(src_path.strpath, dst_path.strpath)
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for src_path in src_paths
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)
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assert dst_path.exists()
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assert dst_path.read() == 'src content'
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for src_path in src_paths:
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assert not src_path.exists()
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+27
@@ -0,0 +1,27 @@
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"""
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Test that our implementation of wrap_non_picklable_objects mimics
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properly the loky implementation.
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"""
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from .._cloudpickle_wrapper import wrap_non_picklable_objects
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from .._cloudpickle_wrapper import _my_wrap_non_picklable_objects
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def a_function(x):
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return x
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class AClass(object):
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def __call__(self, x):
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return x
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def test_wrap_non_picklable_objects():
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# Mostly a smoke test: test that we can use callable in the same way
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# with both our implementation of wrap_non_picklable_objects and the
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# upstream one
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for obj in (a_function, AClass()):
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wrapped_obj = wrap_non_picklable_objects(obj)
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my_wrapped_obj = _my_wrap_non_picklable_objects(obj)
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assert wrapped_obj(1) == my_wrapped_obj(1)
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@@ -0,0 +1,151 @@
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import os
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from joblib.parallel import parallel_config
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from joblib.parallel import parallel_backend
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from joblib.parallel import Parallel, delayed
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from joblib.parallel import BACKENDS
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from joblib.parallel import DEFAULT_BACKEND
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from joblib.parallel import EXTERNAL_BACKENDS
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from joblib._parallel_backends import LokyBackend
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from joblib._parallel_backends import ThreadingBackend
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from joblib._parallel_backends import MultiprocessingBackend
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from joblib.testing import parametrize, raises
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from joblib.test.common import np, with_numpy
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from joblib.test.common import with_multiprocessing
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from joblib.test.test_parallel import check_memmap
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@parametrize("context", [parallel_config, parallel_backend])
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def test_global_parallel_backend(context):
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default = Parallel()._backend
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pb = context('threading')
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try:
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assert isinstance(Parallel()._backend, ThreadingBackend)
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finally:
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pb.unregister()
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assert type(Parallel()._backend) is type(default)
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@parametrize("context", [parallel_config, parallel_backend])
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def test_external_backends(context):
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def register_foo():
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BACKENDS['foo'] = ThreadingBackend
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EXTERNAL_BACKENDS['foo'] = register_foo
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try:
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with context('foo'):
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assert isinstance(Parallel()._backend, ThreadingBackend)
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finally:
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del EXTERNAL_BACKENDS['foo']
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@with_numpy
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@with_multiprocessing
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def test_parallel_config_no_backend(tmpdir):
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# Check that parallel_config allows to change the config
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# even if no backend is set.
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with parallel_config(n_jobs=2, max_nbytes=1, temp_folder=tmpdir):
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with Parallel(prefer="processes") as p:
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assert isinstance(p._backend, LokyBackend)
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assert p.n_jobs == 2
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# Checks that memmapping is enabled
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p(delayed(check_memmap)(a) for a in [np.random.random(10)] * 2)
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assert len(os.listdir(tmpdir)) > 0
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@with_numpy
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@with_multiprocessing
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def test_parallel_config_params_explicit_set(tmpdir):
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with parallel_config(n_jobs=3, max_nbytes=1, temp_folder=tmpdir):
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with Parallel(n_jobs=2, prefer="processes", max_nbytes='1M') as p:
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assert isinstance(p._backend, LokyBackend)
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assert p.n_jobs == 2
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# Checks that memmapping is disabled
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with raises(TypeError, match="Expected np.memmap instance"):
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p(delayed(check_memmap)(a) for a in [np.random.random(10)] * 2)
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@parametrize("param", ["prefer", "require"])
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def test_parallel_config_bad_params(param):
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# Check that an error is raised when setting a wrong backend
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# hint or constraint
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with raises(ValueError, match=f"{param}=wrong is not a valid"):
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with parallel_config(**{param: "wrong"}):
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Parallel()
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def test_parallel_config_constructor_params():
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# Check that an error is raised when backend is None
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# but backend constructor params are given
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with raises(ValueError, match="only supported when backend is not None"):
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with parallel_config(inner_max_num_threads=1):
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pass
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with raises(ValueError, match="only supported when backend is not None"):
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with parallel_config(backend_param=1):
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pass
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def test_parallel_config_nested():
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# Check that nested configuration retrieves the info from the
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# parent config and do not reset them.
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with parallel_config(n_jobs=2):
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p = Parallel()
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assert isinstance(p._backend, BACKENDS[DEFAULT_BACKEND])
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assert p.n_jobs == 2
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with parallel_config(backend='threading'):
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with parallel_config(n_jobs=2):
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p = Parallel()
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assert isinstance(p._backend, ThreadingBackend)
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assert p.n_jobs == 2
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with parallel_config(verbose=100):
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with parallel_config(n_jobs=2):
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p = Parallel()
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assert p.verbose == 100
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assert p.n_jobs == 2
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@with_numpy
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@with_multiprocessing
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@parametrize('backend', ['multiprocessing', 'threading',
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MultiprocessingBackend(), ThreadingBackend()])
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@parametrize("context", [parallel_config, parallel_backend])
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def test_threadpool_limitation_in_child_context_error(context, backend):
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||||
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with raises(AssertionError, match=r"does not acc.*inner_max_num_threads"):
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context(backend, inner_max_num_threads=1)
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||||
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||||
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||||
@parametrize("context", [parallel_config, parallel_backend])
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||||
def test_parallel_n_jobs_none(context):
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# Check that n_jobs=None is interpreted as "unset" in Parallel
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# non regression test for #1473
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with context(backend="threading", n_jobs=2):
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with Parallel(n_jobs=None) as p:
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||||
assert p.n_jobs == 2
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||||
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||||
with context(backend="threading"):
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||||
default_n_jobs = Parallel().n_jobs
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||||
with Parallel(n_jobs=None) as p:
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assert p.n_jobs == default_n_jobs
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||||
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||||
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||||
@parametrize("context", [parallel_config, parallel_backend])
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def test_parallel_config_n_jobs_none(context):
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# Check that n_jobs=None is interpreted as "explicitly set" in
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# parallel_(config/backend)
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||||
# non regression test for #1473
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with context(backend="threading", n_jobs=2):
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with context(backend="threading", n_jobs=None):
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||||
# n_jobs=None resets n_jobs to backend's default
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||||
with Parallel() as p:
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assert p.n_jobs == 1
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@@ -0,0 +1,499 @@
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from __future__ import print_function, division, absolute_import
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import os
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||||
import warnings
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||||
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||||
import pytest
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||||
from random import random
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from uuid import uuid4
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||||
from time import sleep
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||||
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||||
from .. import Parallel, delayed, parallel_config
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||||
from ..parallel import ThreadingBackend, AutoBatchingMixin
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||||
from .._dask import DaskDistributedBackend
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||||
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||||
distributed = pytest.importorskip('distributed')
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||||
dask = pytest.importorskip('dask')
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||||
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||||
# These imports need to be after the pytest.importorskip hence the noqa: E402
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||||
from distributed import Client, LocalCluster, get_client # noqa: E402
|
||||
from distributed.metrics import time # noqa: E402
|
||||
# Note: pytest requires to manually import all fixtures used in the test
|
||||
# and their dependencies.
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||||
from distributed.utils_test import cluster, inc, cleanup # noqa: E402, F401
|
||||
|
||||
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||||
def noop(*args, **kwargs):
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||||
pass
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||||
|
||||
|
||||
def slow_raise_value_error(condition, duration=0.05):
|
||||
sleep(duration)
|
||||
if condition:
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||||
raise ValueError("condition evaluated to True")
|
||||
|
||||
|
||||
def count_events(event_name, client):
|
||||
worker_events = client.run(lambda dask_worker: dask_worker.log)
|
||||
event_counts = {}
|
||||
for w, events in worker_events.items():
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||||
event_counts[w] = len([event for event in list(events)
|
||||
if event[1] == event_name])
|
||||
return event_counts
|
||||
|
||||
|
||||
def test_simple(loop):
|
||||
with cluster() as (s, [a, b]):
|
||||
with Client(s['address'], loop=loop) as client: # noqa: F841
|
||||
with parallel_config(backend='dask'):
|
||||
seq = Parallel()(delayed(inc)(i) for i in range(10))
|
||||
assert seq == [inc(i) for i in range(10)]
|
||||
|
||||
with pytest.raises(ValueError):
|
||||
Parallel()(delayed(slow_raise_value_error)(i == 3)
|
||||
for i in range(10))
|
||||
|
||||
seq = Parallel()(delayed(inc)(i) for i in range(10))
|
||||
assert seq == [inc(i) for i in range(10)]
|
||||
|
||||
|
||||
def test_dask_backend_uses_autobatching(loop):
|
||||
assert (DaskDistributedBackend.compute_batch_size
|
||||
is AutoBatchingMixin.compute_batch_size)
|
||||
|
||||
with cluster() as (s, [a, b]):
|
||||
with Client(s['address'], loop=loop) as client: # noqa: F841
|
||||
with parallel_config(backend='dask'):
|
||||
with Parallel() as parallel:
|
||||
# The backend should be initialized with a default
|
||||
# batch size of 1:
|
||||
backend = parallel._backend
|
||||
assert isinstance(backend, DaskDistributedBackend)
|
||||
assert backend.parallel is parallel
|
||||
assert backend._effective_batch_size == 1
|
||||
|
||||
# Launch many short tasks that should trigger
|
||||
# auto-batching:
|
||||
parallel(
|
||||
delayed(lambda: None)()
|
||||
for _ in range(int(1e4))
|
||||
)
|
||||
assert backend._effective_batch_size > 10
|
||||
|
||||
|
||||
def random2():
|
||||
return random()
|
||||
|
||||
|
||||
def test_dont_assume_function_purity(loop):
|
||||
with cluster() as (s, [a, b]):
|
||||
with Client(s['address'], loop=loop) as client: # noqa: F841
|
||||
with parallel_config(backend='dask'):
|
||||
x, y = Parallel()(delayed(random2)() for i in range(2))
|
||||
assert x != y
|
||||
|
||||
|
||||
@pytest.mark.parametrize("mixed", [True, False])
|
||||
def test_dask_funcname(loop, mixed):
|
||||
from joblib._dask import Batch
|
||||
if not mixed:
|
||||
tasks = [delayed(inc)(i) for i in range(4)]
|
||||
batch_repr = 'batch_of_inc_4_calls'
|
||||
else:
|
||||
tasks = [
|
||||
delayed(abs)(i) if i % 2 else delayed(inc)(i) for i in range(4)
|
||||
]
|
||||
batch_repr = 'mixed_batch_of_inc_4_calls'
|
||||
|
||||
assert repr(Batch(tasks)) == batch_repr
|
||||
|
||||
with cluster() as (s, [a, b]):
|
||||
with Client(s['address'], loop=loop) as client:
|
||||
with parallel_config(backend='dask'):
|
||||
_ = Parallel(batch_size=2, pre_dispatch='all')(tasks)
|
||||
|
||||
def f(dask_scheduler):
|
||||
return list(dask_scheduler.transition_log)
|
||||
batch_repr = batch_repr.replace('4', '2')
|
||||
log = client.run_on_scheduler(f)
|
||||
assert all('batch_of_inc' in tup[0] for tup in log)
|
||||
|
||||
|
||||
def test_no_undesired_distributed_cache_hit():
|
||||
# Dask has a pickle cache for callables that are called many times. Because
|
||||
# the dask backends used to wrap both the functions and the arguments
|
||||
# under instances of the Batch callable class this caching mechanism could
|
||||
# lead to bugs as described in: https://github.com/joblib/joblib/pull/1055
|
||||
# The joblib-dask backend has been refactored to avoid bundling the
|
||||
# arguments as an attribute of the Batch instance to avoid this problem.
|
||||
# This test serves as non-regression problem.
|
||||
|
||||
# Use a large number of input arguments to give the AutoBatchingMixin
|
||||
# enough tasks to kick-in.
|
||||
lists = [[] for _ in range(100)]
|
||||
np = pytest.importorskip('numpy')
|
||||
X = np.arange(int(1e6))
|
||||
|
||||
def isolated_operation(list_, data=None):
|
||||
if data is not None:
|
||||
np.testing.assert_array_equal(data, X)
|
||||
list_.append(uuid4().hex)
|
||||
return list_
|
||||
|
||||
cluster = LocalCluster(n_workers=1, threads_per_worker=2)
|
||||
client = Client(cluster)
|
||||
try:
|
||||
with parallel_config(backend='dask'):
|
||||
# dispatches joblib.parallel.BatchedCalls
|
||||
res = Parallel()(
|
||||
delayed(isolated_operation)(list_) for list_ in lists
|
||||
)
|
||||
|
||||
# The original arguments should not have been mutated as the mutation
|
||||
# happens in the dask worker process.
|
||||
assert lists == [[] for _ in range(100)]
|
||||
|
||||
# Here we did not pass any large numpy array as argument to
|
||||
# isolated_operation so no scattering event should happen under the
|
||||
# hood.
|
||||
counts = count_events('receive-from-scatter', client)
|
||||
assert sum(counts.values()) == 0
|
||||
assert all([len(r) == 1 for r in res])
|
||||
|
||||
with parallel_config(backend='dask'):
|
||||
# Append a large array which will be scattered by dask, and
|
||||
# dispatch joblib._dask.Batch
|
||||
res = Parallel()(
|
||||
delayed(isolated_operation)(list_, data=X) for list_ in lists
|
||||
)
|
||||
|
||||
# This time, auto-scattering should have kicked it.
|
||||
counts = count_events('receive-from-scatter', client)
|
||||
assert sum(counts.values()) > 0
|
||||
assert all([len(r) == 1 for r in res])
|
||||
finally:
|
||||
client.close(timeout=30)
|
||||
cluster.close(timeout=30)
|
||||
|
||||
|
||||
class CountSerialized(object):
|
||||
def __init__(self, x):
|
||||
self.x = x
|
||||
self.count = 0
|
||||
|
||||
def __add__(self, other):
|
||||
return self.x + getattr(other, 'x', other)
|
||||
|
||||
__radd__ = __add__
|
||||
|
||||
def __reduce__(self):
|
||||
self.count += 1
|
||||
return (CountSerialized, (self.x,))
|
||||
|
||||
|
||||
def add5(a, b, c, d=0, e=0):
|
||||
return a + b + c + d + e
|
||||
|
||||
|
||||
def test_manual_scatter(loop):
|
||||
x = CountSerialized(1)
|
||||
y = CountSerialized(2)
|
||||
z = CountSerialized(3)
|
||||
|
||||
with cluster() as (s, [a, b]):
|
||||
with Client(s['address'], loop=loop) as client: # noqa: F841
|
||||
with parallel_config(backend='dask', scatter=[x, y]):
|
||||
f = delayed(add5)
|
||||
tasks = [f(x, y, z, d=4, e=5),
|
||||
f(x, z, y, d=5, e=4),
|
||||
f(y, x, z, d=x, e=5),
|
||||
f(z, z, x, d=z, e=y)]
|
||||
expected = [func(*args, **kwargs)
|
||||
for func, args, kwargs in tasks]
|
||||
results = Parallel()(tasks)
|
||||
|
||||
# Scatter must take a list/tuple
|
||||
with pytest.raises(TypeError):
|
||||
with parallel_config(backend='dask', loop=loop, scatter=1):
|
||||
pass
|
||||
|
||||
assert results == expected
|
||||
|
||||
# Scattered variables only serialized once
|
||||
assert x.count == 1
|
||||
assert y.count == 1
|
||||
# Depending on the version of distributed, the unscattered z variable
|
||||
# is either pickled 4 or 6 times, possibly because of the memoization
|
||||
# of objects that appear several times in the arguments of a delayed
|
||||
# task.
|
||||
assert z.count in (4, 6)
|
||||
|
||||
|
||||
# When the same IOLoop is used for multiple clients in a row, use
|
||||
# loop_in_thread instead of loop to prevent the Client from closing it. See
|
||||
# dask/distributed #4112
|
||||
def test_auto_scatter(loop_in_thread):
|
||||
np = pytest.importorskip('numpy')
|
||||
data1 = np.ones(int(1e4), dtype=np.uint8)
|
||||
data2 = np.ones(int(1e4), dtype=np.uint8)
|
||||
data_to_process = ([data1] * 3) + ([data2] * 3)
|
||||
|
||||
with cluster() as (s, [a, b]):
|
||||
with Client(s['address'], loop=loop_in_thread) as client:
|
||||
with parallel_config(backend='dask'):
|
||||
# Passing the same data as arg and kwarg triggers a single
|
||||
# scatter operation whose result is reused.
|
||||
Parallel()(delayed(noop)(data, data, i, opt=data)
|
||||
for i, data in enumerate(data_to_process))
|
||||
# By default large array are automatically scattered with
|
||||
# broadcast=1 which means that one worker must directly receive
|
||||
# the data from the scatter operation once.
|
||||
counts = count_events('receive-from-scatter', client)
|
||||
assert counts[a['address']] + counts[b['address']] == 2
|
||||
|
||||
with cluster() as (s, [a, b]):
|
||||
with Client(s['address'], loop=loop_in_thread) as client:
|
||||
with parallel_config(backend='dask'):
|
||||
Parallel()(delayed(noop)(data1[:3], i) for i in range(5))
|
||||
# Small arrays are passed within the task definition without going
|
||||
# through a scatter operation.
|
||||
counts = count_events('receive-from-scatter', client)
|
||||
assert counts[a['address']] == 0
|
||||
assert counts[b['address']] == 0
|
||||
|
||||
|
||||
@pytest.mark.parametrize("retry_no", list(range(2)))
|
||||
def test_nested_scatter(loop, retry_no):
|
||||
|
||||
np = pytest.importorskip('numpy')
|
||||
|
||||
NUM_INNER_TASKS = 10
|
||||
NUM_OUTER_TASKS = 10
|
||||
|
||||
def my_sum(x, i, j):
|
||||
return np.sum(x)
|
||||
|
||||
def outer_function_joblib(array, i):
|
||||
client = get_client() # noqa
|
||||
with parallel_config(backend="dask"):
|
||||
results = Parallel()(
|
||||
delayed(my_sum)(array[j:], i, j) for j in range(
|
||||
NUM_INNER_TASKS)
|
||||
)
|
||||
return sum(results)
|
||||
|
||||
with cluster() as (s, [a, b]):
|
||||
with Client(s['address'], loop=loop) as _:
|
||||
with parallel_config(backend="dask"):
|
||||
my_array = np.ones(10000)
|
||||
_ = Parallel()(
|
||||
delayed(outer_function_joblib)(
|
||||
my_array[i:], i) for i in range(NUM_OUTER_TASKS)
|
||||
)
|
||||
|
||||
|
||||
def test_nested_backend_context_manager(loop_in_thread):
|
||||
def get_nested_pids():
|
||||
pids = set(Parallel(n_jobs=2)(delayed(os.getpid)() for _ in range(2)))
|
||||
pids |= set(Parallel(n_jobs=2)(delayed(os.getpid)() for _ in range(2)))
|
||||
return pids
|
||||
|
||||
with cluster() as (s, [a, b]):
|
||||
with Client(s['address'], loop=loop_in_thread) as client:
|
||||
with parallel_config(backend='dask'):
|
||||
pid_groups = Parallel(n_jobs=2)(
|
||||
delayed(get_nested_pids)()
|
||||
for _ in range(10)
|
||||
)
|
||||
for pid_group in pid_groups:
|
||||
assert len(set(pid_group)) <= 2
|
||||
|
||||
# No deadlocks
|
||||
with Client(s['address'], loop=loop_in_thread) as client: # noqa: F841
|
||||
with parallel_config(backend='dask'):
|
||||
pid_groups = Parallel(n_jobs=2)(
|
||||
delayed(get_nested_pids)()
|
||||
for _ in range(10)
|
||||
)
|
||||
for pid_group in pid_groups:
|
||||
assert len(set(pid_group)) <= 2
|
||||
|
||||
|
||||
def test_nested_backend_context_manager_implicit_n_jobs(loop):
|
||||
# Check that Parallel with no explicit n_jobs value automatically selects
|
||||
# all the dask workers, including in nested calls.
|
||||
|
||||
def _backend_type(p):
|
||||
return p._backend.__class__.__name__
|
||||
|
||||
def get_nested_implicit_n_jobs():
|
||||
with Parallel() as p:
|
||||
return _backend_type(p), p.n_jobs
|
||||
|
||||
with cluster() as (s, [a, b]):
|
||||
with Client(s['address'], loop=loop) as client: # noqa: F841
|
||||
with parallel_config(backend='dask'):
|
||||
with Parallel() as p:
|
||||
assert _backend_type(p) == "DaskDistributedBackend"
|
||||
assert p.n_jobs == -1
|
||||
all_nested_n_jobs = p(
|
||||
delayed(get_nested_implicit_n_jobs)()
|
||||
for _ in range(2)
|
||||
)
|
||||
for backend_type, nested_n_jobs in all_nested_n_jobs:
|
||||
assert backend_type == "DaskDistributedBackend"
|
||||
assert nested_n_jobs == -1
|
||||
|
||||
|
||||
def test_errors(loop):
|
||||
with pytest.raises(ValueError) as info:
|
||||
with parallel_config(backend='dask'):
|
||||
pass
|
||||
|
||||
assert "create a dask client" in str(info.value).lower()
|
||||
|
||||
|
||||
def test_correct_nested_backend(loop):
|
||||
with cluster() as (s, [a, b]):
|
||||
with Client(s['address'], loop=loop) as client: # noqa: F841
|
||||
# No requirement, should be us
|
||||
with parallel_config(backend='dask'):
|
||||
result = Parallel(n_jobs=2)(
|
||||
delayed(outer)(nested_require=None) for _ in range(1))
|
||||
assert isinstance(result[0][0][0], DaskDistributedBackend)
|
||||
|
||||
# Require threads, should be threading
|
||||
with parallel_config(backend='dask'):
|
||||
result = Parallel(n_jobs=2)(
|
||||
delayed(outer)(nested_require='sharedmem')
|
||||
for _ in range(1))
|
||||
assert isinstance(result[0][0][0], ThreadingBackend)
|
||||
|
||||
|
||||
def outer(nested_require):
|
||||
return Parallel(n_jobs=2, prefer='threads')(
|
||||
delayed(middle)(nested_require) for _ in range(1)
|
||||
)
|
||||
|
||||
|
||||
def middle(require):
|
||||
return Parallel(n_jobs=2, require=require)(
|
||||
delayed(inner)() for _ in range(1)
|
||||
)
|
||||
|
||||
|
||||
def inner():
|
||||
return Parallel()._backend
|
||||
|
||||
|
||||
def test_secede_with_no_processes(loop):
|
||||
# https://github.com/dask/distributed/issues/1775
|
||||
with Client(loop=loop, processes=False, set_as_default=True):
|
||||
with parallel_config(backend='dask'):
|
||||
Parallel(n_jobs=4)(delayed(id)(i) for i in range(2))
|
||||
|
||||
|
||||
def _worker_address(_):
|
||||
from distributed import get_worker
|
||||
return get_worker().address
|
||||
|
||||
|
||||
def test_dask_backend_keywords(loop):
|
||||
with cluster() as (s, [a, b]):
|
||||
with Client(s['address'], loop=loop) as client: # noqa: F841
|
||||
with parallel_config(backend='dask', workers=a['address']):
|
||||
seq = Parallel()(
|
||||
delayed(_worker_address)(i) for i in range(10))
|
||||
assert seq == [a['address']] * 10
|
||||
|
||||
with parallel_config(backend='dask', workers=b['address']):
|
||||
seq = Parallel()(
|
||||
delayed(_worker_address)(i) for i in range(10))
|
||||
assert seq == [b['address']] * 10
|
||||
|
||||
|
||||
def test_scheduler_tasks_cleanup(loop):
|
||||
with Client(processes=False, loop=loop) as client:
|
||||
with parallel_config(backend='dask'):
|
||||
Parallel()(delayed(inc)(i) for i in range(10))
|
||||
|
||||
start = time()
|
||||
while client.cluster.scheduler.tasks:
|
||||
sleep(0.01)
|
||||
assert time() < start + 5
|
||||
|
||||
assert not client.futures
|
||||
|
||||
|
||||
@pytest.mark.parametrize("cluster_strategy", ["adaptive", "late_scaling"])
|
||||
@pytest.mark.skipif(
|
||||
distributed.__version__ <= '2.1.1' and distributed.__version__ >= '1.28.0',
|
||||
reason="distributed bug - https://github.com/dask/distributed/pull/2841")
|
||||
def test_wait_for_workers(cluster_strategy):
|
||||
cluster = LocalCluster(n_workers=0, processes=False, threads_per_worker=2)
|
||||
client = Client(cluster)
|
||||
if cluster_strategy == "adaptive":
|
||||
cluster.adapt(minimum=0, maximum=2)
|
||||
elif cluster_strategy == "late_scaling":
|
||||
# Tell the cluster to start workers but this is a non-blocking call
|
||||
# and new workers might take time to connect. In this case the Parallel
|
||||
# call should wait for at least one worker to come up before starting
|
||||
# to schedule work.
|
||||
cluster.scale(2)
|
||||
try:
|
||||
with parallel_config(backend='dask'):
|
||||
# The following should wait a bit for at least one worker to
|
||||
# become available.
|
||||
Parallel()(delayed(inc)(i) for i in range(10))
|
||||
finally:
|
||||
client.close()
|
||||
cluster.close()
|
||||
|
||||
|
||||
def test_wait_for_workers_timeout():
|
||||
# Start a cluster with 0 worker:
|
||||
cluster = LocalCluster(n_workers=0, processes=False, threads_per_worker=2)
|
||||
client = Client(cluster)
|
||||
try:
|
||||
with parallel_config(backend='dask', wait_for_workers_timeout=0.1):
|
||||
# Short timeout: DaskDistributedBackend
|
||||
msg = "DaskDistributedBackend has no worker after 0.1 seconds."
|
||||
with pytest.raises(TimeoutError, match=msg):
|
||||
Parallel()(delayed(inc)(i) for i in range(10))
|
||||
|
||||
with parallel_config(backend='dask', wait_for_workers_timeout=0):
|
||||
# No timeout: fallback to generic joblib failure:
|
||||
msg = "DaskDistributedBackend has no active worker"
|
||||
with pytest.raises(RuntimeError, match=msg):
|
||||
Parallel()(delayed(inc)(i) for i in range(10))
|
||||
finally:
|
||||
client.close()
|
||||
cluster.close()
|
||||
|
||||
|
||||
@pytest.mark.parametrize("backend", ["loky", "multiprocessing"])
|
||||
def test_joblib_warning_inside_dask_daemonic_worker(backend):
|
||||
cluster = LocalCluster(n_workers=2)
|
||||
client = Client(cluster)
|
||||
try:
|
||||
|
||||
def func_using_joblib_parallel():
|
||||
# Somehow trying to check the warning type here (e.g. with
|
||||
# pytest.warns(UserWarning)) make the test hang. Work-around:
|
||||
# return the warning record to the client and the warning check is
|
||||
# done client-side.
|
||||
with warnings.catch_warnings(record=True) as record:
|
||||
Parallel(n_jobs=2, backend=backend)(
|
||||
delayed(inc)(i) for i in range(10))
|
||||
|
||||
return record
|
||||
|
||||
fut = client.submit(func_using_joblib_parallel)
|
||||
record = fut.result()
|
||||
|
||||
assert len(record) == 1
|
||||
warning = record[0].message
|
||||
assert isinstance(warning, UserWarning)
|
||||
assert "distributed.worker.daemon" in str(warning)
|
||||
finally:
|
||||
client.close(timeout=30)
|
||||
cluster.close(timeout=30)
|
||||
@@ -0,0 +1,71 @@
|
||||
"""
|
||||
Unit tests for the disk utilities.
|
||||
"""
|
||||
|
||||
# Authors: Gael Varoquaux <gael dot varoquaux at normalesup dot org>
|
||||
# Lars Buitinck
|
||||
# Copyright (c) 2010 Gael Varoquaux
|
||||
# License: BSD Style, 3 clauses.
|
||||
|
||||
from __future__ import with_statement
|
||||
import array
|
||||
import os
|
||||
|
||||
from joblib.disk import disk_used, memstr_to_bytes, mkdirp, rm_subdirs
|
||||
from joblib.testing import parametrize, raises
|
||||
|
||||
###############################################################################
|
||||
|
||||
|
||||
def test_disk_used(tmpdir):
|
||||
cachedir = tmpdir.strpath
|
||||
# Not write a file that is 1M big in this directory, and check the
|
||||
# size. The reason we use such a big file is that it makes us robust
|
||||
# to errors due to block allocation.
|
||||
a = array.array('i')
|
||||
sizeof_i = a.itemsize
|
||||
target_size = 1024
|
||||
n = int(target_size * 1024 / sizeof_i)
|
||||
a = array.array('i', n * (1,))
|
||||
with open(os.path.join(cachedir, 'test'), 'wb') as output:
|
||||
a.tofile(output)
|
||||
assert disk_used(cachedir) >= target_size
|
||||
assert disk_used(cachedir) < target_size + 12
|
||||
|
||||
|
||||
@parametrize('text,value',
|
||||
[('80G', 80 * 1024 ** 3),
|
||||
('1.4M', int(1.4 * 1024 ** 2)),
|
||||
('120M', 120 * 1024 ** 2),
|
||||
('53K', 53 * 1024)])
|
||||
def test_memstr_to_bytes(text, value):
|
||||
assert memstr_to_bytes(text) == value
|
||||
|
||||
|
||||
@parametrize('text,exception,regex',
|
||||
[('fooG', ValueError, r'Invalid literal for size.*fooG.*'),
|
||||
('1.4N', ValueError, r'Invalid literal for size.*1.4N.*')])
|
||||
def test_memstr_to_bytes_exception(text, exception, regex):
|
||||
with raises(exception) as excinfo:
|
||||
memstr_to_bytes(text)
|
||||
assert excinfo.match(regex)
|
||||
|
||||
|
||||
def test_mkdirp(tmpdir):
|
||||
mkdirp(os.path.join(tmpdir.strpath, 'ham'))
|
||||
mkdirp(os.path.join(tmpdir.strpath, 'ham'))
|
||||
mkdirp(os.path.join(tmpdir.strpath, 'spam', 'spam'))
|
||||
|
||||
# Not all OSErrors are ignored
|
||||
with raises(OSError):
|
||||
mkdirp('')
|
||||
|
||||
|
||||
def test_rm_subdirs(tmpdir):
|
||||
sub_path = os.path.join(tmpdir.strpath, "am", "stram")
|
||||
full_path = os.path.join(sub_path, "gram")
|
||||
mkdirp(os.path.join(full_path))
|
||||
|
||||
rm_subdirs(sub_path)
|
||||
assert os.path.exists(sub_path)
|
||||
assert not os.path.exists(full_path)
|
||||
@@ -0,0 +1,310 @@
|
||||
"""
|
||||
Test the func_inspect module.
|
||||
"""
|
||||
|
||||
# Author: Gael Varoquaux <gael dot varoquaux at normalesup dot org>
|
||||
# Copyright (c) 2009 Gael Varoquaux
|
||||
# License: BSD Style, 3 clauses.
|
||||
|
||||
import functools
|
||||
|
||||
from joblib.func_inspect import filter_args, get_func_name, get_func_code
|
||||
from joblib.func_inspect import _clean_win_chars, format_signature
|
||||
from joblib.memory import Memory
|
||||
from joblib.test.common import with_numpy
|
||||
from joblib.testing import fixture, parametrize, raises
|
||||
|
||||
|
||||
###############################################################################
|
||||
# Module-level functions and fixture, for tests
|
||||
def f(x, y=0):
|
||||
pass
|
||||
|
||||
|
||||
def g(x):
|
||||
pass
|
||||
|
||||
|
||||
def h(x, y=0, *args, **kwargs):
|
||||
pass
|
||||
|
||||
|
||||
def i(x=1):
|
||||
pass
|
||||
|
||||
|
||||
def j(x, y, **kwargs):
|
||||
pass
|
||||
|
||||
|
||||
def k(*args, **kwargs):
|
||||
pass
|
||||
|
||||
|
||||
def m1(x, *, y):
|
||||
pass
|
||||
|
||||
|
||||
def m2(x, *, y, z=3):
|
||||
pass
|
||||
|
||||
|
||||
@fixture(scope='module')
|
||||
def cached_func(tmpdir_factory):
|
||||
# Create a Memory object to test decorated functions.
|
||||
# We should be careful not to call the decorated functions, so that
|
||||
# cache directories are not created in the temp dir.
|
||||
cachedir = tmpdir_factory.mktemp("joblib_test_func_inspect")
|
||||
mem = Memory(cachedir.strpath)
|
||||
|
||||
@mem.cache
|
||||
def cached_func_inner(x):
|
||||
return x
|
||||
|
||||
return cached_func_inner
|
||||
|
||||
|
||||
class Klass(object):
|
||||
|
||||
def f(self, x):
|
||||
return x
|
||||
|
||||
|
||||
###############################################################################
|
||||
# Tests
|
||||
|
||||
@parametrize('func,args,filtered_args',
|
||||
[(f, [[], (1, )], {'x': 1, 'y': 0}),
|
||||
(f, [['x'], (1, )], {'y': 0}),
|
||||
(f, [['y'], (0, )], {'x': 0}),
|
||||
(f, [['y'], (0, ), {'y': 1}], {'x': 0}),
|
||||
(f, [['x', 'y'], (0, )], {}),
|
||||
(f, [[], (0,), {'y': 1}], {'x': 0, 'y': 1}),
|
||||
(f, [['y'], (), {'x': 2, 'y': 1}], {'x': 2}),
|
||||
(g, [[], (), {'x': 1}], {'x': 1}),
|
||||
(i, [[], (2, )], {'x': 2})])
|
||||
def test_filter_args(func, args, filtered_args):
|
||||
assert filter_args(func, *args) == filtered_args
|
||||
|
||||
|
||||
def test_filter_args_method():
|
||||
obj = Klass()
|
||||
assert filter_args(obj.f, [], (1, )) == {'x': 1, 'self': obj}
|
||||
|
||||
|
||||
@parametrize('func,args,filtered_args',
|
||||
[(h, [[], (1, )],
|
||||
{'x': 1, 'y': 0, '*': [], '**': {}}),
|
||||
(h, [[], (1, 2, 3, 4)],
|
||||
{'x': 1, 'y': 2, '*': [3, 4], '**': {}}),
|
||||
(h, [[], (1, 25), {'ee': 2}],
|
||||
{'x': 1, 'y': 25, '*': [], '**': {'ee': 2}}),
|
||||
(h, [['*'], (1, 2, 25), {'ee': 2}],
|
||||
{'x': 1, 'y': 2, '**': {'ee': 2}})])
|
||||
def test_filter_varargs(func, args, filtered_args):
|
||||
assert filter_args(func, *args) == filtered_args
|
||||
|
||||
|
||||
test_filter_kwargs_extra_params = [
|
||||
(m1, [[], (1,), {'y': 2}], {'x': 1, 'y': 2}),
|
||||
(m2, [[], (1,), {'y': 2}], {'x': 1, 'y': 2, 'z': 3})
|
||||
]
|
||||
|
||||
|
||||
@parametrize('func,args,filtered_args',
|
||||
[(k, [[], (1, 2), {'ee': 2}],
|
||||
{'*': [1, 2], '**': {'ee': 2}}),
|
||||
(k, [[], (3, 4)],
|
||||
{'*': [3, 4], '**': {}})] +
|
||||
test_filter_kwargs_extra_params)
|
||||
def test_filter_kwargs(func, args, filtered_args):
|
||||
assert filter_args(func, *args) == filtered_args
|
||||
|
||||
|
||||
def test_filter_args_2():
|
||||
assert (filter_args(j, [], (1, 2), {'ee': 2}) ==
|
||||
{'x': 1, 'y': 2, '**': {'ee': 2}})
|
||||
|
||||
ff = functools.partial(f, 1)
|
||||
# filter_args has to special-case partial
|
||||
assert filter_args(ff, [], (1, )) == {'*': [1], '**': {}}
|
||||
assert filter_args(ff, ['y'], (1, )) == {'*': [1], '**': {}}
|
||||
|
||||
|
||||
@parametrize('func,funcname', [(f, 'f'), (g, 'g'),
|
||||
(cached_func, 'cached_func')])
|
||||
def test_func_name(func, funcname):
|
||||
# Check that we are not confused by decoration
|
||||
# here testcase 'cached_func' is the function itself
|
||||
assert get_func_name(func)[1] == funcname
|
||||
|
||||
|
||||
def test_func_name_on_inner_func(cached_func):
|
||||
# Check that we are not confused by decoration
|
||||
# here testcase 'cached_func' is the 'cached_func_inner' function
|
||||
# returned by 'cached_func' fixture
|
||||
assert get_func_name(cached_func)[1] == 'cached_func_inner'
|
||||
|
||||
|
||||
def test_func_name_collision_on_inner_func():
|
||||
# Check that two functions defining and caching an inner function
|
||||
# with the same do not cause (module, name) collision
|
||||
def f():
|
||||
def inner_func():
|
||||
return # pragma: no cover
|
||||
return get_func_name(inner_func)
|
||||
|
||||
def g():
|
||||
def inner_func():
|
||||
return # pragma: no cover
|
||||
return get_func_name(inner_func)
|
||||
|
||||
module, name = f()
|
||||
other_module, other_name = g()
|
||||
|
||||
assert name == other_name
|
||||
assert module != other_module
|
||||
|
||||
|
||||
def test_func_inspect_errors():
|
||||
# Check that func_inspect is robust and will work on weird objects
|
||||
assert get_func_name('a'.lower)[-1] == 'lower'
|
||||
assert get_func_code('a'.lower)[1:] == (None, -1)
|
||||
ff = lambda x: x # noqa: E731
|
||||
assert get_func_name(ff, win_characters=False)[-1] == '<lambda>'
|
||||
assert get_func_code(ff)[1] == __file__.replace('.pyc', '.py')
|
||||
# Simulate a function defined in __main__
|
||||
ff.__module__ = '__main__'
|
||||
assert get_func_name(ff, win_characters=False)[-1] == '<lambda>'
|
||||
assert get_func_code(ff)[1] == __file__.replace('.pyc', '.py')
|
||||
|
||||
|
||||
def func_with_kwonly_args(a, b, *, kw1='kw1', kw2='kw2'):
|
||||
pass
|
||||
|
||||
|
||||
def func_with_signature(a: int, b: int) -> None:
|
||||
pass
|
||||
|
||||
|
||||
def test_filter_args_edge_cases():
|
||||
assert (
|
||||
filter_args(func_with_kwonly_args, [], (1, 2),
|
||||
{'kw1': 3, 'kw2': 4}) ==
|
||||
{'a': 1, 'b': 2, 'kw1': 3, 'kw2': 4})
|
||||
|
||||
# filter_args doesn't care about keyword-only arguments so you
|
||||
# can pass 'kw1' into *args without any problem
|
||||
with raises(ValueError) as excinfo:
|
||||
filter_args(func_with_kwonly_args, [], (1, 2, 3), {'kw2': 2})
|
||||
excinfo.match("Keyword-only parameter 'kw1' was passed as positional "
|
||||
"parameter")
|
||||
|
||||
assert (
|
||||
filter_args(func_with_kwonly_args, ['b', 'kw2'], (1, 2),
|
||||
{'kw1': 3, 'kw2': 4}) ==
|
||||
{'a': 1, 'kw1': 3})
|
||||
|
||||
assert (filter_args(func_with_signature, ['b'], (1, 2)) == {'a': 1})
|
||||
|
||||
|
||||
def test_bound_methods():
|
||||
""" Make sure that calling the same method on two different instances
|
||||
of the same class does resolv to different signatures.
|
||||
"""
|
||||
a = Klass()
|
||||
b = Klass()
|
||||
assert filter_args(a.f, [], (1, )) != filter_args(b.f, [], (1, ))
|
||||
|
||||
|
||||
@parametrize('exception,regex,func,args',
|
||||
[(ValueError, 'ignore_lst must be a list of parameters to ignore',
|
||||
f, ['bar', (None, )]),
|
||||
(ValueError, r'Ignore list: argument \'(.*)\' is not defined',
|
||||
g, [['bar'], (None, )]),
|
||||
(ValueError, 'Wrong number of arguments',
|
||||
h, [[]])])
|
||||
def test_filter_args_error_msg(exception, regex, func, args):
|
||||
""" Make sure that filter_args returns decent error messages, for the
|
||||
sake of the user.
|
||||
"""
|
||||
with raises(exception) as excinfo:
|
||||
filter_args(func, *args)
|
||||
excinfo.match(regex)
|
||||
|
||||
|
||||
def test_filter_args_no_kwargs_mutation():
|
||||
"""None-regression test against 0.12.0 changes.
|
||||
|
||||
https://github.com/joblib/joblib/pull/75
|
||||
|
||||
Make sure filter args doesn't mutate the kwargs dict that gets passed in.
|
||||
"""
|
||||
kwargs = {'x': 0}
|
||||
filter_args(g, [], [], kwargs)
|
||||
assert kwargs == {'x': 0}
|
||||
|
||||
|
||||
def test_clean_win_chars():
|
||||
string = r'C:\foo\bar\main.py'
|
||||
mangled_string = _clean_win_chars(string)
|
||||
for char in ('\\', ':', '<', '>', '!'):
|
||||
assert char not in mangled_string
|
||||
|
||||
|
||||
@parametrize('func,args,kwargs,sgn_expected',
|
||||
[(g, [list(range(5))], {}, 'g([0, 1, 2, 3, 4])'),
|
||||
(k, [1, 2, (3, 4)], {'y': True}, 'k(1, 2, (3, 4), y=True)')])
|
||||
def test_format_signature(func, args, kwargs, sgn_expected):
|
||||
# Test signature formatting.
|
||||
path, sgn_result = format_signature(func, *args, **kwargs)
|
||||
assert sgn_result == sgn_expected
|
||||
|
||||
|
||||
def test_format_signature_long_arguments():
|
||||
shortening_threshold = 1500
|
||||
# shortening gets it down to 700 characters but there is the name
|
||||
# of the function in the signature and a few additional things
|
||||
# like dots for the ellipsis
|
||||
shortening_target = 700 + 10
|
||||
|
||||
arg = 'a' * shortening_threshold
|
||||
_, signature = format_signature(h, arg)
|
||||
assert len(signature) < shortening_target
|
||||
|
||||
nb_args = 5
|
||||
args = [arg for _ in range(nb_args)]
|
||||
_, signature = format_signature(h, *args)
|
||||
assert len(signature) < shortening_target * nb_args
|
||||
|
||||
kwargs = {str(i): arg for i, arg in enumerate(args)}
|
||||
_, signature = format_signature(h, **kwargs)
|
||||
assert len(signature) < shortening_target * nb_args
|
||||
|
||||
_, signature = format_signature(h, *args, **kwargs)
|
||||
assert len(signature) < shortening_target * 2 * nb_args
|
||||
|
||||
|
||||
@with_numpy
|
||||
def test_format_signature_numpy():
|
||||
""" Test the format signature formatting with numpy.
|
||||
"""
|
||||
|
||||
|
||||
def test_special_source_encoding():
|
||||
from joblib.test.test_func_inspect_special_encoding import big5_f
|
||||
func_code, source_file, first_line = get_func_code(big5_f)
|
||||
assert first_line == 5
|
||||
assert "def big5_f():" in func_code
|
||||
assert "test_func_inspect_special_encoding" in source_file
|
||||
|
||||
|
||||
def _get_code():
|
||||
from joblib.test.test_func_inspect_special_encoding import big5_f
|
||||
return get_func_code(big5_f)[0]
|
||||
|
||||
|
||||
def test_func_code_consistency():
|
||||
from joblib.parallel import Parallel, delayed
|
||||
codes = Parallel(n_jobs=2)(delayed(_get_code)() for _ in range(5))
|
||||
assert len(set(codes)) == 1
|
||||
+9
@@ -0,0 +1,9 @@
|
||||
# -*- coding: big5 -*-
|
||||
|
||||
|
||||
# Some Traditional Chinese characters: 一些中文字符
|
||||
def big5_f():
|
||||
"""用於測試的函數
|
||||
"""
|
||||
# 註釋
|
||||
return 0
|
||||
@@ -0,0 +1,495 @@
|
||||
"""
|
||||
Test the hashing module.
|
||||
"""
|
||||
|
||||
# Author: Gael Varoquaux <gael dot varoquaux at normalesup dot org>
|
||||
# Copyright (c) 2009 Gael Varoquaux
|
||||
# License: BSD Style, 3 clauses.
|
||||
|
||||
import time
|
||||
import hashlib
|
||||
import sys
|
||||
import gc
|
||||
import io
|
||||
import collections
|
||||
import itertools
|
||||
import pickle
|
||||
import random
|
||||
from concurrent.futures import ProcessPoolExecutor
|
||||
from decimal import Decimal
|
||||
|
||||
from joblib.hashing import hash
|
||||
from joblib.func_inspect import filter_args
|
||||
from joblib.memory import Memory
|
||||
from joblib.testing import raises, skipif, fixture, parametrize
|
||||
from joblib.test.common import np, with_numpy
|
||||
|
||||
|
||||
def unicode(s):
|
||||
return s
|
||||
|
||||
|
||||
###############################################################################
|
||||
# Helper functions for the tests
|
||||
def time_func(func, *args):
|
||||
""" Time function func on *args.
|
||||
"""
|
||||
times = list()
|
||||
for _ in range(3):
|
||||
t1 = time.time()
|
||||
func(*args)
|
||||
times.append(time.time() - t1)
|
||||
return min(times)
|
||||
|
||||
|
||||
def relative_time(func1, func2, *args):
|
||||
""" Return the relative time between func1 and func2 applied on
|
||||
*args.
|
||||
"""
|
||||
time_func1 = time_func(func1, *args)
|
||||
time_func2 = time_func(func2, *args)
|
||||
relative_diff = 0.5 * (abs(time_func1 - time_func2)
|
||||
/ (time_func1 + time_func2))
|
||||
return relative_diff
|
||||
|
||||
|
||||
class Klass(object):
|
||||
|
||||
def f(self, x):
|
||||
return x
|
||||
|
||||
|
||||
class KlassWithCachedMethod(object):
|
||||
|
||||
def __init__(self, cachedir):
|
||||
mem = Memory(location=cachedir)
|
||||
self.f = mem.cache(self.f)
|
||||
|
||||
def f(self, x):
|
||||
return x
|
||||
|
||||
|
||||
###############################################################################
|
||||
# Tests
|
||||
|
||||
input_list = [1, 2, 1., 2., 1 + 1j, 2. + 1j,
|
||||
'a', 'b',
|
||||
(1,), (1, 1,), [1, ], [1, 1, ],
|
||||
{1: 1}, {1: 2}, {2: 1},
|
||||
None,
|
||||
gc.collect,
|
||||
[1, ].append,
|
||||
# Next 2 sets have unorderable elements in python 3.
|
||||
set(('a', 1)),
|
||||
set(('a', 1, ('a', 1))),
|
||||
# Next 2 dicts have unorderable type of keys in python 3.
|
||||
{'a': 1, 1: 2},
|
||||
{'a': 1, 1: 2, 'd': {'a': 1}}]
|
||||
|
||||
|
||||
@parametrize('obj1', input_list)
|
||||
@parametrize('obj2', input_list)
|
||||
def test_trivial_hash(obj1, obj2):
|
||||
"""Smoke test hash on various types."""
|
||||
# Check that 2 objects have the same hash only if they are the same.
|
||||
are_hashes_equal = hash(obj1) == hash(obj2)
|
||||
are_objs_identical = obj1 is obj2
|
||||
assert are_hashes_equal == are_objs_identical
|
||||
|
||||
|
||||
def test_hash_methods():
|
||||
# Check that hashing instance methods works
|
||||
a = io.StringIO(unicode('a'))
|
||||
assert hash(a.flush) == hash(a.flush)
|
||||
a1 = collections.deque(range(10))
|
||||
a2 = collections.deque(range(9))
|
||||
assert hash(a1.extend) != hash(a2.extend)
|
||||
|
||||
|
||||
@fixture(scope='function')
|
||||
@with_numpy
|
||||
def three_np_arrays():
|
||||
rnd = np.random.RandomState(0)
|
||||
arr1 = rnd.random_sample((10, 10))
|
||||
arr2 = arr1.copy()
|
||||
arr3 = arr2.copy()
|
||||
arr3[0] += 1
|
||||
return arr1, arr2, arr3
|
||||
|
||||
|
||||
def test_hash_numpy_arrays(three_np_arrays):
|
||||
arr1, arr2, arr3 = three_np_arrays
|
||||
|
||||
for obj1, obj2 in itertools.product(three_np_arrays, repeat=2):
|
||||
are_hashes_equal = hash(obj1) == hash(obj2)
|
||||
are_arrays_equal = np.all(obj1 == obj2)
|
||||
assert are_hashes_equal == are_arrays_equal
|
||||
|
||||
assert hash(arr1) != hash(arr1.T)
|
||||
|
||||
|
||||
def test_hash_numpy_dict_of_arrays(three_np_arrays):
|
||||
arr1, arr2, arr3 = three_np_arrays
|
||||
|
||||
d1 = {1: arr1, 2: arr2}
|
||||
d2 = {1: arr2, 2: arr1}
|
||||
d3 = {1: arr2, 2: arr3}
|
||||
|
||||
assert hash(d1) == hash(d2)
|
||||
assert hash(d1) != hash(d3)
|
||||
|
||||
|
||||
@with_numpy
|
||||
@parametrize('dtype', ['datetime64[s]', 'timedelta64[D]'])
|
||||
def test_numpy_datetime_array(dtype):
|
||||
# memoryview is not supported for some dtypes e.g. datetime64
|
||||
# see https://github.com/joblib/joblib/issues/188 for more details
|
||||
a_hash = hash(np.arange(10))
|
||||
array = np.arange(0, 10, dtype=dtype)
|
||||
assert hash(array) != a_hash
|
||||
|
||||
|
||||
@with_numpy
|
||||
def test_hash_numpy_noncontiguous():
|
||||
a = np.asarray(np.arange(6000).reshape((1000, 2, 3)),
|
||||
order='F')[:, :1, :]
|
||||
b = np.ascontiguousarray(a)
|
||||
assert hash(a) != hash(b)
|
||||
|
||||
c = np.asfortranarray(a)
|
||||
assert hash(a) != hash(c)
|
||||
|
||||
|
||||
@with_numpy
|
||||
@parametrize('coerce_mmap', [True, False])
|
||||
def test_hash_memmap(tmpdir, coerce_mmap):
|
||||
"""Check that memmap and arrays hash identically if coerce_mmap is True."""
|
||||
filename = tmpdir.join('memmap_temp').strpath
|
||||
try:
|
||||
m = np.memmap(filename, shape=(10, 10), mode='w+')
|
||||
a = np.asarray(m)
|
||||
are_hashes_equal = (hash(a, coerce_mmap=coerce_mmap) ==
|
||||
hash(m, coerce_mmap=coerce_mmap))
|
||||
assert are_hashes_equal == coerce_mmap
|
||||
finally:
|
||||
if 'm' in locals():
|
||||
del m
|
||||
# Force a garbage-collection cycle, to be certain that the
|
||||
# object is delete, and we don't run in a problem under
|
||||
# Windows with a file handle still open.
|
||||
gc.collect()
|
||||
|
||||
|
||||
@with_numpy
|
||||
@skipif(sys.platform == 'win32', reason='This test is not stable under windows'
|
||||
' for some reason')
|
||||
def test_hash_numpy_performance():
|
||||
""" Check the performance of hashing numpy arrays:
|
||||
|
||||
In [22]: a = np.random.random(1000000)
|
||||
|
||||
In [23]: %timeit hashlib.md5(a).hexdigest()
|
||||
100 loops, best of 3: 20.7 ms per loop
|
||||
|
||||
In [24]: %timeit hashlib.md5(pickle.dumps(a, protocol=2)).hexdigest()
|
||||
1 loops, best of 3: 73.1 ms per loop
|
||||
|
||||
In [25]: %timeit hashlib.md5(cPickle.dumps(a, protocol=2)).hexdigest()
|
||||
10 loops, best of 3: 53.9 ms per loop
|
||||
|
||||
In [26]: %timeit hash(a)
|
||||
100 loops, best of 3: 20.8 ms per loop
|
||||
"""
|
||||
rnd = np.random.RandomState(0)
|
||||
a = rnd.random_sample(1000000)
|
||||
|
||||
def md5_hash(x):
|
||||
return hashlib.md5(memoryview(x)).hexdigest()
|
||||
|
||||
relative_diff = relative_time(md5_hash, hash, a)
|
||||
assert relative_diff < 0.3
|
||||
|
||||
# Check that hashing an tuple of 3 arrays takes approximately
|
||||
# 3 times as much as hashing one array
|
||||
time_hashlib = 3 * time_func(md5_hash, a)
|
||||
time_hash = time_func(hash, (a, a, a))
|
||||
relative_diff = 0.5 * (abs(time_hash - time_hashlib)
|
||||
/ (time_hash + time_hashlib))
|
||||
assert relative_diff < 0.3
|
||||
|
||||
|
||||
def test_bound_methods_hash():
|
||||
""" Make sure that calling the same method on two different instances
|
||||
of the same class does resolve to the same hashes.
|
||||
"""
|
||||
a = Klass()
|
||||
b = Klass()
|
||||
assert (hash(filter_args(a.f, [], (1, ))) ==
|
||||
hash(filter_args(b.f, [], (1, ))))
|
||||
|
||||
|
||||
def test_bound_cached_methods_hash(tmpdir):
|
||||
""" Make sure that calling the same _cached_ method on two different
|
||||
instances of the same class does resolve to the same hashes.
|
||||
"""
|
||||
a = KlassWithCachedMethod(tmpdir.strpath)
|
||||
b = KlassWithCachedMethod(tmpdir.strpath)
|
||||
assert (hash(filter_args(a.f.func, [], (1, ))) ==
|
||||
hash(filter_args(b.f.func, [], (1, ))))
|
||||
|
||||
|
||||
@with_numpy
|
||||
def test_hash_object_dtype():
|
||||
""" Make sure that ndarrays with dtype `object' hash correctly."""
|
||||
|
||||
a = np.array([np.arange(i) for i in range(6)], dtype=object)
|
||||
b = np.array([np.arange(i) for i in range(6)], dtype=object)
|
||||
|
||||
assert hash(a) == hash(b)
|
||||
|
||||
|
||||
@with_numpy
|
||||
def test_numpy_scalar():
|
||||
# Numpy scalars are built from compiled functions, and lead to
|
||||
# strange pickling paths explored, that can give hash collisions
|
||||
a = np.float64(2.0)
|
||||
b = np.float64(3.0)
|
||||
assert hash(a) != hash(b)
|
||||
|
||||
|
||||
def test_dict_hash(tmpdir):
|
||||
# Check that dictionaries hash consistently, even though the ordering
|
||||
# of the keys is not guaranteed
|
||||
k = KlassWithCachedMethod(tmpdir.strpath)
|
||||
|
||||
d = {'#s12069__c_maps.nii.gz': [33],
|
||||
'#s12158__c_maps.nii.gz': [33],
|
||||
'#s12258__c_maps.nii.gz': [33],
|
||||
'#s12277__c_maps.nii.gz': [33],
|
||||
'#s12300__c_maps.nii.gz': [33],
|
||||
'#s12401__c_maps.nii.gz': [33],
|
||||
'#s12430__c_maps.nii.gz': [33],
|
||||
'#s13817__c_maps.nii.gz': [33],
|
||||
'#s13903__c_maps.nii.gz': [33],
|
||||
'#s13916__c_maps.nii.gz': [33],
|
||||
'#s13981__c_maps.nii.gz': [33],
|
||||
'#s13982__c_maps.nii.gz': [33],
|
||||
'#s13983__c_maps.nii.gz': [33]}
|
||||
|
||||
a = k.f(d)
|
||||
b = k.f(a)
|
||||
|
||||
assert hash(a) == hash(b)
|
||||
|
||||
|
||||
def test_set_hash(tmpdir):
|
||||
# Check that sets hash consistently, even though their ordering
|
||||
# is not guaranteed
|
||||
k = KlassWithCachedMethod(tmpdir.strpath)
|
||||
|
||||
s = set(['#s12069__c_maps.nii.gz',
|
||||
'#s12158__c_maps.nii.gz',
|
||||
'#s12258__c_maps.nii.gz',
|
||||
'#s12277__c_maps.nii.gz',
|
||||
'#s12300__c_maps.nii.gz',
|
||||
'#s12401__c_maps.nii.gz',
|
||||
'#s12430__c_maps.nii.gz',
|
||||
'#s13817__c_maps.nii.gz',
|
||||
'#s13903__c_maps.nii.gz',
|
||||
'#s13916__c_maps.nii.gz',
|
||||
'#s13981__c_maps.nii.gz',
|
||||
'#s13982__c_maps.nii.gz',
|
||||
'#s13983__c_maps.nii.gz'])
|
||||
|
||||
a = k.f(s)
|
||||
b = k.f(a)
|
||||
|
||||
assert hash(a) == hash(b)
|
||||
|
||||
|
||||
def test_set_decimal_hash():
|
||||
# Check that sets containing decimals hash consistently, even though
|
||||
# ordering is not guaranteed
|
||||
assert (hash(set([Decimal(0), Decimal('NaN')])) ==
|
||||
hash(set([Decimal('NaN'), Decimal(0)])))
|
||||
|
||||
|
||||
def test_string():
|
||||
# Test that we obtain the same hash for object owning several strings,
|
||||
# whatever the past of these strings (which are immutable in Python)
|
||||
string = 'foo'
|
||||
a = {string: 'bar'}
|
||||
b = {string: 'bar'}
|
||||
c = pickle.loads(pickle.dumps(b))
|
||||
assert hash([a, b]) == hash([a, c])
|
||||
|
||||
|
||||
@with_numpy
|
||||
def test_numpy_dtype_pickling():
|
||||
# numpy dtype hashing is tricky to get right: see #231, #239, #251 #1080,
|
||||
# #1082, and explanatory comments inside
|
||||
# ``joblib.hashing.NumpyHasher.save``.
|
||||
|
||||
# In this test, we make sure that the pickling of numpy dtypes is robust to
|
||||
# object identity and object copy.
|
||||
|
||||
dt1 = np.dtype('f4')
|
||||
dt2 = np.dtype('f4')
|
||||
|
||||
# simple dtypes objects are interned
|
||||
assert dt1 is dt2
|
||||
assert hash(dt1) == hash(dt2)
|
||||
|
||||
dt1_roundtripped = pickle.loads(pickle.dumps(dt1))
|
||||
assert dt1 is not dt1_roundtripped
|
||||
assert hash(dt1) == hash(dt1_roundtripped)
|
||||
|
||||
assert hash([dt1, dt1]) == hash([dt1_roundtripped, dt1_roundtripped])
|
||||
assert hash([dt1, dt1]) == hash([dt1, dt1_roundtripped])
|
||||
|
||||
complex_dt1 = np.dtype(
|
||||
[('name', np.str_, 16), ('grades', np.float64, (2,))]
|
||||
)
|
||||
complex_dt2 = np.dtype(
|
||||
[('name', np.str_, 16), ('grades', np.float64, (2,))]
|
||||
)
|
||||
|
||||
# complex dtypes objects are not interned
|
||||
assert hash(complex_dt1) == hash(complex_dt2)
|
||||
|
||||
complex_dt1_roundtripped = pickle.loads(pickle.dumps(complex_dt1))
|
||||
assert complex_dt1_roundtripped is not complex_dt1
|
||||
assert hash(complex_dt1) == hash(complex_dt1_roundtripped)
|
||||
|
||||
assert hash([complex_dt1, complex_dt1]) == hash(
|
||||
[complex_dt1_roundtripped, complex_dt1_roundtripped]
|
||||
)
|
||||
assert hash([complex_dt1, complex_dt1]) == hash(
|
||||
[complex_dt1_roundtripped, complex_dt1]
|
||||
)
|
||||
|
||||
|
||||
@parametrize('to_hash,expected',
|
||||
[('This is a string to hash',
|
||||
'71b3f47df22cb19431d85d92d0b230b2'),
|
||||
(u"C'est l\xe9t\xe9",
|
||||
'2d8d189e9b2b0b2e384d93c868c0e576'),
|
||||
((123456, 54321, -98765),
|
||||
'e205227dd82250871fa25aa0ec690aa3'),
|
||||
([random.Random(42).random() for _ in range(5)],
|
||||
'a11ffad81f9682a7d901e6edc3d16c84'),
|
||||
({'abcde': 123, 'sadfas': [-9999, 2, 3]},
|
||||
'aeda150553d4bb5c69f0e69d51b0e2ef')])
|
||||
def test_hashes_stay_the_same(to_hash, expected):
|
||||
# We want to make sure that hashes don't change with joblib
|
||||
# version. For end users, that would mean that they have to
|
||||
# regenerate their cache from scratch, which potentially means
|
||||
# lengthy recomputations.
|
||||
# Expected results have been generated with joblib 0.9.2
|
||||
assert hash(to_hash) == expected
|
||||
|
||||
|
||||
@with_numpy
|
||||
def test_hashes_are_different_between_c_and_fortran_contiguous_arrays():
|
||||
# We want to be sure that the c-contiguous and f-contiguous versions of the
|
||||
# same array produce 2 different hashes.
|
||||
rng = np.random.RandomState(0)
|
||||
arr_c = rng.random_sample((10, 10))
|
||||
arr_f = np.asfortranarray(arr_c)
|
||||
assert hash(arr_c) != hash(arr_f)
|
||||
|
||||
|
||||
@with_numpy
|
||||
def test_0d_array():
|
||||
hash(np.array(0))
|
||||
|
||||
|
||||
@with_numpy
|
||||
def test_0d_and_1d_array_hashing_is_different():
|
||||
assert hash(np.array(0)) != hash(np.array([0]))
|
||||
|
||||
|
||||
@with_numpy
|
||||
def test_hashes_stay_the_same_with_numpy_objects():
|
||||
# Note: joblib used to test numpy objects hashing by comparing the produced
|
||||
# hash of an object with some hard-coded target value to guarantee that
|
||||
# hashing remains the same across joblib versions. However, since numpy
|
||||
# 1.20 and joblib 1.0, joblib relies on potentially unstable implementation
|
||||
# details of numpy to hash np.dtype objects, which makes the stability of
|
||||
# hash values across different environments hard to guarantee and to test.
|
||||
# As a result, hashing stability across joblib versions becomes best-effort
|
||||
# only, and we only test the consistency within a single environment by
|
||||
# making sure:
|
||||
# - the hash of two copies of the same objects is the same
|
||||
# - hashing some object in two different python processes produces the same
|
||||
# value. This should be viewed as a proxy for testing hash consistency
|
||||
# through time between Python sessions (provided no change in the
|
||||
# environment was done between sessions).
|
||||
|
||||
def create_objects_to_hash():
|
||||
rng = np.random.RandomState(42)
|
||||
# Being explicit about dtypes in order to avoid
|
||||
# architecture-related differences. Also using 'f4' rather than
|
||||
# 'f8' for float arrays because 'f8' arrays generated by
|
||||
# rng.random.randn don't seem to be bit-identical on 32bit and
|
||||
# 64bit machines.
|
||||
to_hash_list = [
|
||||
rng.randint(-1000, high=1000, size=50).astype('<i8'),
|
||||
tuple(rng.randn(3).astype('<f4') for _ in range(5)),
|
||||
[rng.randn(3).astype('<f4') for _ in range(5)],
|
||||
{
|
||||
-3333: rng.randn(3, 5).astype('<f4'),
|
||||
0: [
|
||||
rng.randint(10, size=20).astype('<i8'),
|
||||
rng.randn(10).astype('<f4')
|
||||
]
|
||||
},
|
||||
# Non regression cases for
|
||||
# https://github.com/joblib/joblib/issues/308
|
||||
np.arange(100, dtype='<i8').reshape((10, 10)),
|
||||
# Fortran contiguous array
|
||||
np.asfortranarray(np.arange(100, dtype='<i8').reshape((10, 10))),
|
||||
# Non contiguous array
|
||||
np.arange(100, dtype='<i8').reshape((10, 10))[:, :2],
|
||||
]
|
||||
return to_hash_list
|
||||
|
||||
# Create two lists containing copies of the same objects. joblib.hash
|
||||
# should return the same hash for to_hash_list_one[i] and
|
||||
# to_hash_list_two[i]
|
||||
to_hash_list_one = create_objects_to_hash()
|
||||
to_hash_list_two = create_objects_to_hash()
|
||||
|
||||
e1 = ProcessPoolExecutor(max_workers=1)
|
||||
e2 = ProcessPoolExecutor(max_workers=1)
|
||||
|
||||
try:
|
||||
for obj_1, obj_2 in zip(to_hash_list_one, to_hash_list_two):
|
||||
# testing consistency of hashes across python processes
|
||||
hash_1 = e1.submit(hash, obj_1).result()
|
||||
hash_2 = e2.submit(hash, obj_1).result()
|
||||
assert hash_1 == hash_2
|
||||
|
||||
# testing consistency when hashing two copies of the same objects.
|
||||
hash_3 = e1.submit(hash, obj_2).result()
|
||||
assert hash_1 == hash_3
|
||||
|
||||
finally:
|
||||
e1.shutdown()
|
||||
e2.shutdown()
|
||||
|
||||
|
||||
def test_hashing_pickling_error():
|
||||
def non_picklable():
|
||||
return 42
|
||||
|
||||
with raises(pickle.PicklingError) as excinfo:
|
||||
hash(non_picklable)
|
||||
excinfo.match('PicklingError while hashing')
|
||||
|
||||
|
||||
def test_wrong_hash_name():
|
||||
msg = "Valid options for 'hash_name' are"
|
||||
with raises(ValueError, match=msg):
|
||||
data = {'foo': 'bar'}
|
||||
hash(data, hash_name='invalid')
|
||||
@@ -0,0 +1,14 @@
|
||||
# Basic test case to test functioning of module's top-level
|
||||
|
||||
try:
|
||||
from joblib import * # noqa
|
||||
_top_import_error = None
|
||||
except Exception as ex: # pragma: no cover
|
||||
_top_import_error = ex
|
||||
|
||||
|
||||
def test_import_joblib():
|
||||
# Test either above import has failed for some reason
|
||||
# "import *" only allowed at module level, hence we
|
||||
# rely on setting up the variable above
|
||||
assert _top_import_error is None
|
||||
@@ -0,0 +1,31 @@
|
||||
"""
|
||||
Test the logger module.
|
||||
"""
|
||||
|
||||
# Author: Gael Varoquaux <gael dot varoquaux at normalesup dot org>
|
||||
# Copyright (c) 2009 Gael Varoquaux
|
||||
# License: BSD Style, 3 clauses.
|
||||
import re
|
||||
|
||||
from joblib.logger import PrintTime
|
||||
|
||||
|
||||
def test_print_time(tmpdir, capsys):
|
||||
# A simple smoke test for PrintTime.
|
||||
logfile = tmpdir.join('test.log').strpath
|
||||
print_time = PrintTime(logfile=logfile)
|
||||
print_time('Foo')
|
||||
# Create a second time, to smoke test log rotation.
|
||||
print_time = PrintTime(logfile=logfile)
|
||||
print_time('Foo')
|
||||
# And a third time
|
||||
print_time = PrintTime(logfile=logfile)
|
||||
print_time('Foo')
|
||||
|
||||
out_printed_text, err_printed_text = capsys.readouterr()
|
||||
# Use regexps to be robust to time variations
|
||||
match = r"Foo: 0\..s, 0\..min\nFoo: 0\..s, 0..min\nFoo: " + \
|
||||
r".\..s, 0..min\n"
|
||||
if not re.match(match, err_printed_text):
|
||||
raise AssertionError('Excepted %s, got %s' %
|
||||
(match, err_printed_text))
|
||||
File diff suppressed because it is too large
Load Diff
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,170 @@
|
||||
import asyncio
|
||||
import gc
|
||||
import shutil
|
||||
|
||||
import pytest
|
||||
|
||||
from joblib.memory import (AsyncMemorizedFunc, AsyncNotMemorizedFunc,
|
||||
MemorizedResult, Memory, NotMemorizedResult)
|
||||
from joblib.test.common import np, with_numpy
|
||||
from joblib.testing import raises
|
||||
|
||||
from .test_memory import (corrupt_single_cache_item,
|
||||
monkeypatch_cached_func_warn)
|
||||
|
||||
|
||||
async def check_identity_lazy_async(func, accumulator, location):
|
||||
""" Similar to check_identity_lazy_async for coroutine functions"""
|
||||
memory = Memory(location=location, verbose=0)
|
||||
func = memory.cache(func)
|
||||
for i in range(3):
|
||||
for _ in range(2):
|
||||
value = await func(i)
|
||||
assert value == i
|
||||
assert len(accumulator) == i + 1
|
||||
|
||||
|
||||
@pytest.mark.asyncio
|
||||
async def test_memory_integration_async(tmpdir):
|
||||
accumulator = list()
|
||||
|
||||
async def f(n):
|
||||
await asyncio.sleep(0.1)
|
||||
accumulator.append(1)
|
||||
return n
|
||||
|
||||
await check_identity_lazy_async(f, accumulator, tmpdir.strpath)
|
||||
|
||||
# Now test clearing
|
||||
for compress in (False, True):
|
||||
for mmap_mode in ('r', None):
|
||||
memory = Memory(location=tmpdir.strpath, verbose=10,
|
||||
mmap_mode=mmap_mode, compress=compress)
|
||||
# First clear the cache directory, to check that our code can
|
||||
# handle that
|
||||
# NOTE: this line would raise an exception, as the database
|
||||
# file is still open; we ignore the error since we want to
|
||||
# test what happens if the directory disappears
|
||||
shutil.rmtree(tmpdir.strpath, ignore_errors=True)
|
||||
g = memory.cache(f)
|
||||
await g(1)
|
||||
g.clear(warn=False)
|
||||
current_accumulator = len(accumulator)
|
||||
out = await g(1)
|
||||
|
||||
assert len(accumulator) == current_accumulator + 1
|
||||
# Also, check that Memory.eval works similarly
|
||||
evaled = await memory.eval(f, 1)
|
||||
assert evaled == out
|
||||
assert len(accumulator) == current_accumulator + 1
|
||||
|
||||
# Now do a smoke test with a function defined in __main__, as the name
|
||||
# mangling rules are more complex
|
||||
f.__module__ = '__main__'
|
||||
memory = Memory(location=tmpdir.strpath, verbose=0)
|
||||
await memory.cache(f)(1)
|
||||
|
||||
|
||||
@pytest.mark.asyncio
|
||||
async def test_no_memory_async():
|
||||
accumulator = list()
|
||||
|
||||
async def ff(x):
|
||||
await asyncio.sleep(0.1)
|
||||
accumulator.append(1)
|
||||
return x
|
||||
|
||||
memory = Memory(location=None, verbose=0)
|
||||
gg = memory.cache(ff)
|
||||
for _ in range(4):
|
||||
current_accumulator = len(accumulator)
|
||||
await gg(1)
|
||||
assert len(accumulator) == current_accumulator + 1
|
||||
|
||||
|
||||
@with_numpy
|
||||
@pytest.mark.asyncio
|
||||
async def test_memory_numpy_check_mmap_mode_async(tmpdir, monkeypatch):
|
||||
"""Check that mmap_mode is respected even at the first call"""
|
||||
|
||||
memory = Memory(location=tmpdir.strpath, mmap_mode='r', verbose=0)
|
||||
|
||||
@memory.cache()
|
||||
async def twice(a):
|
||||
return a * 2
|
||||
|
||||
a = np.ones(3)
|
||||
b = await twice(a)
|
||||
c = await twice(a)
|
||||
|
||||
assert isinstance(c, np.memmap)
|
||||
assert c.mode == 'r'
|
||||
|
||||
assert isinstance(b, np.memmap)
|
||||
assert b.mode == 'r'
|
||||
|
||||
# Corrupts the file, Deleting b and c mmaps
|
||||
# is necessary to be able edit the file
|
||||
del b
|
||||
del c
|
||||
gc.collect()
|
||||
corrupt_single_cache_item(memory)
|
||||
|
||||
# Make sure that corrupting the file causes recomputation and that
|
||||
# a warning is issued.
|
||||
recorded_warnings = monkeypatch_cached_func_warn(twice, monkeypatch)
|
||||
d = await twice(a)
|
||||
assert len(recorded_warnings) == 1
|
||||
exception_msg = 'Exception while loading results'
|
||||
assert exception_msg in recorded_warnings[0]
|
||||
# Asserts that the recomputation returns a mmap
|
||||
assert isinstance(d, np.memmap)
|
||||
assert d.mode == 'r'
|
||||
|
||||
|
||||
@pytest.mark.asyncio
|
||||
async def test_call_and_shelve_async(tmpdir):
|
||||
async def f(x, y=1):
|
||||
await asyncio.sleep(0.1)
|
||||
return x ** 2 + y
|
||||
|
||||
# Test MemorizedFunc outputting a reference to cache.
|
||||
for func, Result in zip((AsyncMemorizedFunc(f, tmpdir.strpath),
|
||||
AsyncNotMemorizedFunc(f),
|
||||
Memory(location=tmpdir.strpath,
|
||||
verbose=0).cache(f),
|
||||
Memory(location=None).cache(f),
|
||||
),
|
||||
(MemorizedResult, NotMemorizedResult,
|
||||
MemorizedResult, NotMemorizedResult,
|
||||
)):
|
||||
for _ in range(2):
|
||||
result = await func.call_and_shelve(2)
|
||||
assert isinstance(result, Result)
|
||||
assert result.get() == 5
|
||||
|
||||
result.clear()
|
||||
with raises(KeyError):
|
||||
result.get()
|
||||
result.clear() # Do nothing if there is no cache.
|
||||
|
||||
|
||||
@pytest.mark.asyncio
|
||||
async def test_memorized_func_call_async(memory):
|
||||
|
||||
async def ff(x, counter):
|
||||
await asyncio.sleep(0.1)
|
||||
counter[x] = counter.get(x, 0) + 1
|
||||
return counter[x]
|
||||
|
||||
gg = memory.cache(ff, ignore=['counter'])
|
||||
|
||||
counter = {}
|
||||
assert await gg(2, counter) == 1
|
||||
assert await gg(2, counter) == 1
|
||||
|
||||
x, meta = await gg.call(2, counter)
|
||||
assert x == 2, "f has not been called properly"
|
||||
assert isinstance(meta, dict), (
|
||||
"Metadata are not returned by MemorizedFunc.call."
|
||||
)
|
||||
+32
@@ -0,0 +1,32 @@
|
||||
"""
|
||||
Pyodide and other single-threaded Python builds will be missing the
|
||||
_multiprocessing module. Test that joblib still works in this environment.
|
||||
"""
|
||||
|
||||
import os
|
||||
import subprocess
|
||||
import sys
|
||||
|
||||
|
||||
def test_missing_multiprocessing(tmp_path):
|
||||
"""
|
||||
Test that import joblib works even if _multiprocessing is missing.
|
||||
|
||||
pytest has already imported everything from joblib. The most reasonable way
|
||||
to test importing joblib with modified environment is to invoke a separate
|
||||
Python process. This also ensures that we don't break other tests by
|
||||
importing a bad `_multiprocessing` module.
|
||||
"""
|
||||
(tmp_path / "_multiprocessing.py").write_text(
|
||||
'raise ImportError("No _multiprocessing module!")'
|
||||
)
|
||||
env = dict(os.environ)
|
||||
# For subprocess, use current sys.path with our custom version of
|
||||
# multiprocessing inserted.
|
||||
env["PYTHONPATH"] = ":".join([str(tmp_path)] + sys.path)
|
||||
subprocess.check_call(
|
||||
[sys.executable, "-c",
|
||||
"import joblib, math; "
|
||||
"joblib.Parallel(n_jobs=1)("
|
||||
"joblib.delayed(math.sqrt)(i**2) for i in range(10))"
|
||||
], env=env)
|
||||
@@ -0,0 +1,53 @@
|
||||
import sys
|
||||
import joblib
|
||||
from joblib.testing import check_subprocess_call
|
||||
from joblib.test.common import with_multiprocessing
|
||||
|
||||
|
||||
def test_version():
|
||||
assert hasattr(joblib, '__version__'), (
|
||||
"There are no __version__ argument on the joblib module")
|
||||
|
||||
|
||||
@with_multiprocessing
|
||||
def test_no_start_method_side_effect_on_import():
|
||||
# check that importing joblib does not implicitly set the global
|
||||
# start_method for multiprocessing.
|
||||
code = """if True:
|
||||
import joblib
|
||||
import multiprocessing as mp
|
||||
# The following line would raise RuntimeError if the
|
||||
# start_method is already set.
|
||||
mp.set_start_method("loky")
|
||||
"""
|
||||
check_subprocess_call([sys.executable, '-c', code])
|
||||
|
||||
|
||||
@with_multiprocessing
|
||||
def test_no_semaphore_tracker_on_import():
|
||||
# check that importing joblib does not implicitly spawn a resource tracker
|
||||
# or a semaphore tracker
|
||||
code = """if True:
|
||||
import joblib
|
||||
from multiprocessing import semaphore_tracker
|
||||
# The following line would raise RuntimeError if the
|
||||
# start_method is already set.
|
||||
msg = "multiprocessing.semaphore_tracker has been spawned on import"
|
||||
assert semaphore_tracker._semaphore_tracker._fd is None, msg"""
|
||||
if sys.version_info >= (3, 8):
|
||||
# semaphore_tracker was renamed in Python 3.8:
|
||||
code = code.replace("semaphore_tracker", "resource_tracker")
|
||||
check_subprocess_call([sys.executable, '-c', code])
|
||||
|
||||
|
||||
@with_multiprocessing
|
||||
def test_no_resource_tracker_on_import():
|
||||
code = """if True:
|
||||
import joblib
|
||||
from joblib.externals.loky.backend import resource_tracker
|
||||
# The following line would raise RuntimeError if the
|
||||
# start_method is already set.
|
||||
msg = "loky.resource_tracker has been spawned on import"
|
||||
assert resource_tracker._resource_tracker._fd is None, msg
|
||||
"""
|
||||
check_subprocess_call([sys.executable, '-c', code])
|
||||
File diff suppressed because it is too large
Load Diff
+16
@@ -0,0 +1,16 @@
|
||||
"""Test the old numpy pickler, compatibility version."""
|
||||
|
||||
# numpy_pickle is not a drop-in replacement of pickle, as it takes
|
||||
# filenames instead of open files as arguments.
|
||||
from joblib import numpy_pickle_compat
|
||||
|
||||
|
||||
def test_z_file(tmpdir):
|
||||
# Test saving and loading data with Zfiles.
|
||||
filename = tmpdir.join('test.pkl').strpath
|
||||
data = numpy_pickle_compat.asbytes('Foo, \n Bar, baz, \n\nfoobar')
|
||||
with open(filename, 'wb') as f:
|
||||
numpy_pickle_compat.write_zfile(f, data)
|
||||
with open(filename, 'rb') as f:
|
||||
data_read = numpy_pickle_compat.read_zfile(f)
|
||||
assert data == data_read
|
||||
@@ -0,0 +1,9 @@
|
||||
from joblib.compressor import BinaryZlibFile
|
||||
from joblib.testing import parametrize
|
||||
|
||||
|
||||
@parametrize('filename', ['test', u'test']) # testing str and unicode names
|
||||
def test_binary_zlib_file(tmpdir, filename):
|
||||
"""Testing creation of files depending on the type of the filenames."""
|
||||
binary_file = BinaryZlibFile(tmpdir.join(filename).strpath, mode='wb')
|
||||
binary_file.close()
|
||||
File diff suppressed because it is too large
Load Diff
@@ -0,0 +1,94 @@
|
||||
|
||||
try:
|
||||
# Python 2.7: use the C pickle to speed up
|
||||
# test_concurrency_safe_write which pickles big python objects
|
||||
import cPickle as cpickle
|
||||
except ImportError:
|
||||
import pickle as cpickle
|
||||
import functools
|
||||
from pickle import PicklingError
|
||||
import time
|
||||
|
||||
import pytest
|
||||
|
||||
from joblib.testing import parametrize, timeout
|
||||
from joblib.test.common import with_multiprocessing
|
||||
from joblib.backports import concurrency_safe_rename
|
||||
from joblib import Parallel, delayed
|
||||
from joblib._store_backends import (
|
||||
concurrency_safe_write,
|
||||
FileSystemStoreBackend,
|
||||
CacheWarning,
|
||||
)
|
||||
|
||||
|
||||
def write_func(output, filename):
|
||||
with open(filename, 'wb') as f:
|
||||
cpickle.dump(output, f)
|
||||
|
||||
|
||||
def load_func(expected, filename):
|
||||
for i in range(10):
|
||||
try:
|
||||
with open(filename, 'rb') as f:
|
||||
reloaded = cpickle.load(f)
|
||||
break
|
||||
except (OSError, IOError):
|
||||
# On Windows you can have WindowsError ([Error 5] Access
|
||||
# is denied or [Error 13] Permission denied) when reading the file,
|
||||
# probably because a writer process has a lock on the file
|
||||
time.sleep(0.1)
|
||||
else:
|
||||
raise
|
||||
assert expected == reloaded
|
||||
|
||||
|
||||
def concurrency_safe_write_rename(to_write, filename, write_func):
|
||||
temporary_filename = concurrency_safe_write(to_write,
|
||||
filename, write_func)
|
||||
concurrency_safe_rename(temporary_filename, filename)
|
||||
|
||||
|
||||
@timeout(0) # No timeout as this test can be long
|
||||
@with_multiprocessing
|
||||
@parametrize('backend', ['multiprocessing', 'loky', 'threading'])
|
||||
def test_concurrency_safe_write(tmpdir, backend):
|
||||
# Add one item to cache
|
||||
filename = tmpdir.join('test.pkl').strpath
|
||||
|
||||
obj = {str(i): i for i in range(int(1e5))}
|
||||
funcs = [functools.partial(concurrency_safe_write_rename,
|
||||
write_func=write_func)
|
||||
if i % 3 != 2 else load_func for i in range(12)]
|
||||
Parallel(n_jobs=2, backend=backend)(
|
||||
delayed(func)(obj, filename) for func in funcs)
|
||||
|
||||
|
||||
def test_warning_on_dump_failure(tmpdir):
|
||||
# Check that a warning is raised when the dump fails for any reason but
|
||||
# a PicklingError.
|
||||
class UnpicklableObject(object):
|
||||
def __reduce__(self):
|
||||
raise RuntimeError("some exception")
|
||||
|
||||
backend = FileSystemStoreBackend()
|
||||
backend.location = tmpdir.join('test_warning_on_pickling_error').strpath
|
||||
backend.compress = None
|
||||
|
||||
with pytest.warns(CacheWarning, match="some exception"):
|
||||
backend.dump_item("testpath", UnpicklableObject())
|
||||
|
||||
|
||||
def test_warning_on_pickling_error(tmpdir):
|
||||
# This is separate from test_warning_on_dump_failure because in the
|
||||
# future we will turn this into an exception.
|
||||
class UnpicklableObject(object):
|
||||
def __reduce__(self):
|
||||
raise PicklingError("not picklable")
|
||||
|
||||
backend = FileSystemStoreBackend()
|
||||
backend.location = tmpdir.join('test_warning_on_pickling_error').strpath
|
||||
backend.compress = None
|
||||
|
||||
with pytest.warns(FutureWarning, match="not picklable"):
|
||||
backend.dump_item("testpath", UnpicklableObject())
|
||||
@@ -0,0 +1,75 @@
|
||||
import sys
|
||||
import re
|
||||
|
||||
from joblib.testing import raises, check_subprocess_call
|
||||
|
||||
|
||||
def test_check_subprocess_call():
|
||||
code = '\n'.join(['result = 1 + 2 * 3',
|
||||
'print(result)',
|
||||
'my_list = [1, 2, 3]',
|
||||
'print(my_list)'])
|
||||
|
||||
check_subprocess_call([sys.executable, '-c', code])
|
||||
|
||||
# Now checking stdout with a regex
|
||||
check_subprocess_call([sys.executable, '-c', code],
|
||||
# Regex needed for platform-specific line endings
|
||||
stdout_regex=r'7\s{1,2}\[1, 2, 3\]')
|
||||
|
||||
|
||||
def test_check_subprocess_call_non_matching_regex():
|
||||
code = '42'
|
||||
non_matching_pattern = '_no_way_this_matches_anything_'
|
||||
|
||||
with raises(ValueError) as excinfo:
|
||||
check_subprocess_call([sys.executable, '-c', code],
|
||||
stdout_regex=non_matching_pattern)
|
||||
excinfo.match('Unexpected stdout.+{}'.format(non_matching_pattern))
|
||||
|
||||
|
||||
def test_check_subprocess_call_wrong_command():
|
||||
wrong_command = '_a_command_that_does_not_exist_'
|
||||
with raises(OSError):
|
||||
check_subprocess_call([wrong_command])
|
||||
|
||||
|
||||
def test_check_subprocess_call_non_zero_return_code():
|
||||
code_with_non_zero_exit = '\n'.join([
|
||||
'import sys',
|
||||
'print("writing on stdout")',
|
||||
'sys.stderr.write("writing on stderr")',
|
||||
'sys.exit(123)'])
|
||||
|
||||
pattern = re.compile('Non-zero return code: 123.+'
|
||||
'Stdout:\nwriting on stdout.+'
|
||||
'Stderr:\nwriting on stderr', re.DOTALL)
|
||||
|
||||
with raises(ValueError) as excinfo:
|
||||
check_subprocess_call([sys.executable, '-c', code_with_non_zero_exit])
|
||||
excinfo.match(pattern)
|
||||
|
||||
|
||||
def test_check_subprocess_call_timeout():
|
||||
code_timing_out = '\n'.join([
|
||||
'import time',
|
||||
'import sys',
|
||||
'print("before sleep on stdout")',
|
||||
'sys.stdout.flush()',
|
||||
'sys.stderr.write("before sleep on stderr")',
|
||||
'sys.stderr.flush()',
|
||||
# We need to sleep for at least 2 * timeout seconds in case the SIGKILL
|
||||
# is triggered.
|
||||
'time.sleep(10)',
|
||||
'print("process should have be killed before")',
|
||||
'sys.stdout.flush()'])
|
||||
|
||||
pattern = re.compile('Non-zero return code:.+'
|
||||
'Stdout:\nbefore sleep on stdout\\s+'
|
||||
'Stderr:\nbefore sleep on stderr',
|
||||
re.DOTALL)
|
||||
|
||||
with raises(ValueError) as excinfo:
|
||||
check_subprocess_call([sys.executable, '-c', code_timing_out],
|
||||
timeout=1)
|
||||
excinfo.match(pattern)
|
||||
@@ -0,0 +1,27 @@
|
||||
import pytest
|
||||
|
||||
from joblib._utils import eval_expr
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"expr",
|
||||
["exec('import os')", "print(1)", "import os", "1+1; import os", "1^1"],
|
||||
)
|
||||
def test_eval_expr_invalid(expr):
|
||||
with pytest.raises(
|
||||
ValueError, match="is not a valid or supported arithmetic"
|
||||
):
|
||||
eval_expr(expr)
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"expr, result",
|
||||
[
|
||||
("2*6", 12),
|
||||
("2**6", 64),
|
||||
("1 + 2*3**(4) / (6 + -7)", -161.0),
|
||||
("(20 // 3) % 5", 1),
|
||||
],
|
||||
)
|
||||
def test_eval_expr_valid(expr, result):
|
||||
assert eval_expr(expr) == result
|
||||
@@ -0,0 +1,8 @@
|
||||
def return_slice_of_data(arr, start_idx, end_idx):
|
||||
return arr[start_idx:end_idx]
|
||||
|
||||
|
||||
def print_filename_and_raise(arr):
|
||||
from joblib._memmapping_reducer import _get_backing_memmap
|
||||
print(_get_backing_memmap(arr).filename)
|
||||
raise ValueError
|
||||
Reference in New Issue
Block a user